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AT2G36230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Encodes a BBMII isomerase involved in histidine biosynthesis.
Computational
Description (TAIR10)
ALBINO AND PALE GREEN 10 (APG10); FUNCTIONS IN: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis (InterPro:IPR006062), Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic (InterPro:IPR011858); Has 5178 Blast hits to 5176 proteins in 1344 species: Archae - 226; Bacteria - 3159; Metazoa - 0; Fungi - 140; Plants - 59; Viruses - 0; Other Eukaryotes - 1594 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G36230-MONOMERBioCyc:MetaCyc:AT2G36230-MONOMERBRENDA:5.3.1.16EC:5.3.1.16
eggNOG:COG0106eggNOG:KOG3055EMBL:AB006139EMBL:AB008929
EMBL:AC006921EMBL:AK118659EMBL:AY140058EMBL:BT002552
EMBL:CP002685EnsemblPlants:AT2G36230EnsemblPlants:AT2G36230.1entrez:818195
Gene3D:3.20.20.70GeneID:818195Genevisible:O82782GO:GO:0000105
GO:GO:0000107GO:GO:0003949GO:GO:0009507Gramene:AT2G36230.1
gramene_pathway:5.3.1.16gramene_pathway:HISTSYN-PWYgramene_plant_reactome:1119509gramene_plant_reactome:6875785
gramene_plant_reactome:6876578hmmpanther:PTHR21235hmmpanther:PTHR21235:SF23HOGENOM:HOG000172261
InParanoid:O82782IntAct:O82782InterPro:IPR006062InterPro:IPR011060
InterPro:IPR011858InterPro:IPR013785KEGG:00340+5.3.1.16KEGG:ath:AT2G36230
KO:K01814OMA:FVAMNKWPaxDb:O82782Pfam:O82782
Pfam:PF00977PhylomeDB:O82782PIR:T51822PRIDE:O82782
PRO:PR:O82782ProteinModelPortal:O82782Proteomes:UP000006548RefSeq:NP_181165.1
SMR:O82782STRING:3702.AT2G36230.1SUPFAM:SSF51366TAIR:AT2G36230
tair10-symbols:APG10tair10-symbols:HISN3TIGRfam:TIGR02129TIGRFAMs:TIGR02129
UniGene:At.20166UniGene:At.66347UniPathway:UPA00031UniProt:O82782
Coordinates (TAIR10) chr2:-:15193878..15195509
Molecular Weight (calculated) 33367.10 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.16
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)