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AT2G35770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 28
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 28 (scpl28); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 27 (TAIR:AT3G07990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G35770-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC006068EMBL:BX820274EMBL:CP002685EnsemblPlants:AT2G35770
EnsemblPlants:AT2G35770.1entrez:818149ESTHER:arath-SCP28Gene3D:3.40.50.1820
GeneID:818149Genevisible:Q8S8K6GO:GO:0004185GO:GO:0005576
GO:GO:0005773GO:GO:0051603Gramene:AT2G35770.1hmmpanther:PTHR11802
hmmpanther:PTHR11802:SF44HOGENOM:HOG000198295InParanoid:Q8S8K6InterPro:IPR001563
InterPro:IPR018202InterPro:IPR029058KEGG:ath:AT2G35770KO:K16297
MEROPS:S10.A28OMA:YTRKYMNPANTHER:PTHR11802PaxDb:Q8S8K6
Pfam:PF00450Pfam:Q8S8K6PhylomeDB:Q8S8K6PIR:G84772
PRIDE:Q8S8K6PRINTS:PR00724PRO:PR:Q8S8K6PROSITE:PS00131
ProteinModelPortal:Q8S8K6Proteomes:UP000006548RefSeq:NP_181120.2scanprosite:PS00131
SMR:Q8S8K6STRING:3702.AT2G35770.1SUPFAM:SSF53474TAIR:AT2G35770
tair10-symbols:scpl28UniGene:At.50118UniGene:At.68373UniProt:Q8S8K6
Coordinates (TAIR10) chr2:-:15034179..15036497
Molecular Weight (calculated) 52101.10 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.34
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MMITKKLYQC MCLLCMVIAL LDVVSSDDAK EQKMKDKIIS LPGQPPNLNF SQFSGYVTVD PAAGRALFYW LTEAPRPSGT KPLVLWLNGG PGCSSIAYGA
101: SEEVGPFRVN PDGKTLRLNL YAWNKVANVL FLDSPAGVGF SYTNTSSDEL TVGDKRTGED AYRFLVRWLE RFPEYKERAF YIAGESYAGH YIPELAQLIV
201: NRNKGAKNPT INLKGILMGN PLVDDYNDNK GMRDYWWNHG LISDESYNDL TKWCLNDSIL FPKLNCNAAL NQALSEFGDI DPYNINSPAC TTHASSNEWM
301: QAWRYRGNDE CVVGYTRKYM NDPNVHKSFH ARLNGSTPWT PCSRVIRKNW KDSPKSMLPI IKNLLQAHLR IWIFSGDSDA VLPLSGTRHS INAMKLKSSK
401: RWYPWYHSHG LVGGWSQVYE DGLLTYTTVR AAGHEVPLSQ PRLALFLFTH FLANHSLPSS PS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)