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AT2G29640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : JOSEPHIN-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
JOSEPHIN-like protein (JOSL); CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155); BEST Arabidopsis thaliana protein match is: josephin protein-related (TAIR:AT1G07300.1); Has 526 Blast hits to 526 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
EC:3.4.19.12eggNOG:ENOG4111I4JeggNOG:KOG2934EMBL:AC005496
EMBL:CP002685EnsemblPlants:AT2G29640EnsemblPlants:AT2G29640.1entrez:817514
GeneID:817514GO:GO:0000166GO:GO:0008242GO:GO:0036459
Gramene:AT2G29640.1hmmpanther:PTHR13291hmmpanther:PTHR13291:SF0HOGENOM:HOG000113135
InParanoid:O82391InterPro:IPR006155KEGG:ath:AT2G29640KO:K15235
MEROPS:C86.A02OMA:RFNANTRPaxDb:O82391Pfam:O82391
Pfam:PF02099Pfscan:PS50957PhylomeDB:O82391PIR:G84698
PRO:PR:O82391PROSITE:PS50957ProteinModelPortal:O82391Proteomes:UP000006548
RefSeq:NP_180525.1SMART:SM01246SMR:O82391STRING:3702.AT2G29640.1
TAIR:AT2G29640tair10-symbols:JOSLUniGene:At.52967UniProt:O82391
Coordinates (TAIR10) chr2:+:12671206..12673300
Molecular Weight (calculated) 40491.40 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.40
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSESKIYH ERQRLQFCLL HCLNNLFQDK DAFTKESLNS IAEKLETNDP NKETWTPLSF VLKPHHNTIT GNYDVNVMIT ALEGKGKSVV WHDKRIGASS
101: IDLDDADTLM GIVLNVPVKR YGGLWRSRHW VVVRKINGVW YNLDSDLVVP QLFRDDDEVR GFLDQNLSLD VIGLIWNLPY NANQLPLASN YRVVITHWSD
201: LNGMFSHVTN YPLDFDVYPQ VSSKVSAIYK ATGTKRFNAN TRPVTPGKQS SVKGPYYKNP GCTTSCGLRL PRKTECTAAR LIKDLSCKFV MGLRLVVMRK
301: KKKKRSPPLK KASSSGISQP SVISVVNDNN HRSAAIEDCI QFINSSSSFT RSNSTCGSKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)