AT2G29640.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.994 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : JOSEPHIN-like protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
JOSEPHIN-like protein (JOSL); CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155); BEST Arabidopsis thaliana protein match is: josephin protein-related (TAIR:AT1G07300.1); Has 526 Blast hits to 526 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:+:12671206..12673300 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 40491.40 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.82 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||
Length | 360 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MADSESKIYH ERQRLQFCLL HCLNNLFQDK DAFTKESLNS IAEKLETNDP NKETWTPLSF VLKPHHNTIT GNYDVNVMIT ALEGKGKSVV WHDKRIGASS 101: IDLDDADTLM GIVLNVPVKR YGGLWRSRHW VVVRKINGVW YNLDSDLVVP QLFRDDDEVR GFLDQNLSLD VIGLIWNLPY NANQLPLASN YRVVITHWSD 201: LNGMFSHVTN YPLDFDVYPQ VSSKVSAIYK ATGTKRFNAN TRPVTPGKQS SVKGPYYKNP GCTTSCGLRL PRKTECTAAR LIKDLSCKFV MGLRLVVMRK 301: KKKKRSPPLK KASSSGISQP SVISVVNDNN HRSAAIEDCI QFINSSSSFT RSNSTCGSKS |
||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)