suba logo
AT2G18328.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAD-like 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAD-like 4 (RL4); FUNCTIONS IN: DNA binding; EXPRESSED IN: rosette leaf; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: RAD-like 1 (TAIR:AT4G39250.1); Has 590 Blast hits to 589 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 0; Plants - 467; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5269eggNOG:KOG0724EMBL:AC006439EMBL:CP002685
EMBL:DQ395345EMBL:DQ487660EMBL:DQ652756EnsemblPlants:AT2G18328
EnsemblPlants:AT2G18328.1entrez:5007884Gene3D:1.10.10.60GeneID:5007884
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT2G18328.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF177InParanoid:Q1G3C4
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017884KEGG:ath:AT2G18328
OMA:WTAREDKPaxDb:Q1G3C4Pfam:PF00249Pfam:Q1G3C4
Pfscan:PS51293PhylomeDB:Q1G3C4PRIDE:Q1G3C4PRO:PR:Q1G3C4
PROSITE:PS51293ProteinModelPortal:Q1G3C4Proteomes:UP000006548RefSeq:NP_001077912.1
SMART:SM00717SMR:Q1G3C4STRING:3702.AT2G18328.1SUPFAM:SSF46689
TAIR:AT2G18328tair10-symbols:ATRL4tair10-symbols:RL4UniGene:At.49279
UniProt:Q1G3C4
Coordinates (TAIR10) chr2:+:7964478..7964711
Molecular Weight (calculated) 8983.46 Da
IEP (calculated) 9.60
GRAVY (calculated) -1.15
Length 77 amino acids
Sequence (TAIR10)
(BLAST)
1: MASSSMSTSS WTAREDKQFE MALAKFDKDT PDRWQKIARA VGGKSTEEVK RHYELLLRDV NDIESGRYPQ PRYRNTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)