AT1G76140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Prolyl oligopeptidase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 8127 Blast hits to 8050 proteins in 1368 species: Archae - 105; Bacteria - 3923; Metazoa - 339; Fungi - 43; Plants - 244; Viruses - 0; Other Eukaryotes - 3473 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:28571187..28574852 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89409.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 795 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTAFASHAR SHVFAFVTVP TITRRLRINI LRQSPLSSSL LLNETFSNRP NSVSRRCYCS SSAIMGSSSV FGEQLQYPAT RRDDSVVDDY HGVKIGDPYR 101: WLEDPDAEEV KEFVQSQVKL TDSVLEKCET KEKLRQNITK LIDHPRYDSP FRQGDKYFYF HNTGLQAQSV LYMQDNLDAE PEVLLDPNTL SDDGTVALNT 201: FSVSEDAKYL AYGLSSSGSD WVTIKLMKIE DKKVEPDTLS WVKFTGITWT HDSKGFFYGR YPAPKEGEDI DAGTETNSNL YHELYYHFIG TDQSQDILCW 301: RDNENPKYMF GAEVTDDGKY LIMSIGESCD PVNKLYYCDM TSLSGGLESF RGSSSFLPFI KLVDTFDAQY SVISNDETLF TFLTNKDAPK YKLVRVDLKE 401: PNSWTDVVEE HEKDVLASAC AVNGNHLVAC YMSDVKHILQ IRDLKSGSLL HQLPLDIGSV SDVSARRKDN TFFFSFTSFL TPGVIYKCDL ANESPEVKVF 501: REVTVPGFDR EAFQAIQVFY PSKDGTKIPM FIVAKKDIKL DGSHPCLLYA YGGFNISITP SFSASRIVLS KHLGVVFCFA NIRGGGEYGE EWHKAGSLAK 601: KQNCFDDFIS GAEYLVSAGY TQPSKLCIEG GSNGGLLVGA CINQRPDLYG CALAHVGVMD MLRFHKFTIG HAWTSDYGCS ENEEEFHWLI KYSPLHNVKR 701: PWEQQTDHLV QYPSTMLLTA DHDDRVVPLH SLKLLATLQH VLCTSLDNSP QMNPIIGRIE VKAGHGAGRP TQKMIDEAAD RYSFMAKMVN ASWTE |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)