AT1G72910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Toll-Interleukin-Resistance (TIR) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72900.1); Has 4443 Blast hits to 4310 proteins in 184 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 4322; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27435634..27436887 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42905.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.22 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 380 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSHTATKYD VFLSFRGHDT RQNFISFLYK ELVRRSIRTF KDDKELENGQ RISSELKRTI EVSRFAVVVV SETYAASSWC LDELVTIMDF EKKGSITVMP 101: IFYGVEPNHV RWQTGVLAEQ FKKHGSREDH EKVLKWRQAL TNFAQLSGDC SGDDDSKLVD KIANEISNKK TIYATINNGK NLVGIDTHMK ELNRLMHMNC 201: NKVTVRMVGI WARGGDGRSA LAKYVYQTSC QQFDSHCFLG NVKTISQGRH SAHLHDEFLR NIKREDSNKQ CLKNQKVLLV ADNVTKVKQL EALAGDFSSF 301: GPGSVVIITT DNKGLLNSYG ITDVYEVEHL KFCGILRSLG FKKRAAAFQR ALCRAKSFAT ECFCCQSSSI SGYGKVTDLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)