AT1G72790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G57070.1); Has 16953 Blast hits to 10626 proteins in 654 species: Archae - 27; Bacteria - 1228; Metazoa - 7030; Fungi - 2381; Plants - 3856; Viruses - 536; Other Eukaryotes - 1895 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27394848..27396533 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62618.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.77 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEDDGDAST PFWLQSRRNN TYFRRTASLG GRTTTIATQI FFAGTAAILI VVFIIPPFFS SVSQIFRPHL VRKSWDYLNF VLVLFAVLCG FLSRNTNNDE 101: SNHHKEEDIR NKFSTSPSII DRRSRVSNSG TTPRYWNDDR GGGGGDQTVY KRFSRLRSVS SYPDLRLREY EADERWRFYD DTRVSQCRYE DVDPIYPNQS 201: YRNWHEEGKP PPEDVDQTED GDNGEGSKVR NGGSETEKVE VVATAEAEVV EELKVPSAPP YIPSPPPSPP RPPPAKQAKR KTNRVYQDVS PQEEKKERDD 301: FVATTTPIPP PATVYQKSNK QEKKKGGATK DFLIALRRKK KKQRQQSIDG LDLLFGSDPP LVYSPPPPPP PPPPFFQGLF SSKKGKSKKN NSNPPPPPPP 401: PPPERRYESR ASTSKLRKAP VESRTSKPNP PAKVTQYVGT GSESPLMPIP PPPPPPPFKM PAWKFVKRGD YVRMASDISI SSDEPDDPDV AQSAGSKEAA 501: GSMFCPSPDV DTKADDFIAR FRAGLKLEKM NSVKRGRSNL GPEPGLHESG SSTGYRPSPS V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)