suba logo
AT1G70790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G01540.1); Has 4172 Blast hits to 3576 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 2406; Fungi - 526; Plants - 879; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5038eggNOG:KOG1030EMBL:AC008148EMBL:AC011663
EMBL:AY085364EMBL:BT026107EMBL:CP002684EnsemblPlants:AT1G70790
EnsemblPlants:AT1G70790.1EnsemblPlants:AT1G70790.2entrez:843416Gene3D:2.60.40.150
GeneID:843416Genevisible:Q9S7J9GO:GO:0005096GO:GO:0005543
GO:GO:0005634GO:GO:0005886GO:GO:0009738GO:GO:0009789
GO:GO:0043547GO:GO:0046872Gramene:AT1G70790.1Gramene:AT1G70790.2
hmmpanther:PTHR23180hmmpanther:PTHR23180:SF268HOGENOM:HOG000238659InParanoid:Q9S7J9
InterPro:IPR000008KEGG:ath:AT1G70790OMA:MEDKPLGPaxDb:Q9S7J9
Pfam:PF00168Pfscan:PS50004PhylomeDB:Q9S7J9PIR:E96732
PRIDE:Q9S7J9PRO:PR:Q9S7J9PROSITE:PS50004ProteinModelPortal:Q9S7J9
Proteomes:UP000006548RefSeq:NP_565001.1RefSeq:NP_849874.1SMART:SM00239
SMR:Q9S7J9STRING:3702.AT1G70790.1SUPFAM:SSF49562TAIR:AT1G70790
UniGene:At.35268UniProt:Q9S7J9
Coordinates (TAIR10) chr1:+:26700724..26702127
Molecular Weight (calculated) 21055.50 Da
IEP (calculated) 7.85
GRAVY (calculated) -0.52
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDKPLGILR VHVKRGINLA IRDATTSDPY VVITLANQKL KTRVINNNCN PVWNEQLTLS IKDVNDPIRL TVFDKDRFSG DDKMGDAEID FRPFLEAHQM
101: ELDFQKLPNG CAIKRIRPGR TNCLAEESSI TWSNGKIMQE MILRLKNVEC GEVELMLEWT DGPGCKGLGR EGSKKTPWMP TKRLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)