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AT1G62045.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G11740.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNMSeggNOG:KOG0522EMBL:AK117512EMBL:BT005164
EMBL:CP002684EnsemblPlants:AT1G62045EnsemblPlants:AT1G62045.1entrez:842500
GeneID:842500Gramene:AT1G62045.1hmmpanther:PTHR33386hmmpanther:PTHR33386:SF3
HOGENOM:HOG000239470KEGG:ath:AT1G62045OMA:GIGEMPEPhylomeDB:Q8GYM5
Proteomes:UP000006548RefSeq:NP_564789.1TAIR:AT1G62045UniGene:At.36322
UniProt:Q8GYM5
Coordinates (TAIR10) chr1:-:22934905..22935108
Molecular Weight (calculated) 7331.54 Da
IEP (calculated) 9.79
GRAVY (calculated) -1.10
Length 67 amino acids
Sequence (TAIR10)
(BLAST)
1: MASEAPSWAD QWGTGGIGEM PEEDNTKSKK DAGGKNSGQT KSAKIVDFVS FKWMKNLVHK KKKDSDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)