suba logo
AT1G55990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G33610.1); Has 244 Blast hits to 187 proteins in 50 species: Archae - 0; Bacteria - 206; Metazoa - 7; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G55990EnsemblPlants:AT1G55990.1entrez:842050
GeneID:842050Gramene:AT1G55990.1InParanoid:F4I3I2KEGG:ath:AT1G55990
OMA:GICWRRRPaxDb:F4I3I2PRIDE:F4I3I2Proteomes:UP000006548
RefSeq:NP_175995.1TAIR:AT1G55990UniGene:At.66039UniProt:F4I3I2
Coordinates (TAIR10) chr1:-:20942487..20942951
Molecular Weight (calculated) 14558.80 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.04
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVQGLEVVV EGGGEKNGMD GRLVGREGMD GRLVGREGMD GRLVGREGIV VGNEGKVGIA VGMVGRFGCG KADGIGNGDI AVGIVGKDGC GNVDGNGGCC
101: WRRRREAEQV LIIIEEETLT KKAMRKSLYD AILDVLINL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)