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AT1G51130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nse4, component of Smc5/6 DNA repair complex
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nse4, component of Smc5/6 DNA repair complex; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: Nse4, component of Smc5/6 DNA repair complex (TAIR:AT3G20760.1); Has 297 Blast hits to 295 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 132; Plants - 74; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5125eggNOG:KOG2866EMBL:AC079828EMBL:BT004096
EMBL:BT006087EMBL:CP002684EnsemblPlants:AT1G51130EnsemblPlants:AT1G51130.1
entrez:841536GeneID:841536GO:GO:0005634GO:GO:0006281
GO:GO:0006310GO:GO:0030915Gramene:AT1G51130.1hmmpanther:PTHR16140
hmmpanther:PTHR16140:SF0HOGENOM:HOG000070621InParanoid:Q9C689InterPro:IPR014854
InterPro:IPR027786KEGG:ath:AT1G51130OMA:RRCKRKLPANTHER:PTHR16140
PaxDb:Q9C689Pfam:PF08743Pfam:Q9C689PhylomeDB:Q9C689
PIR:G96548PRIDE:Q9C689PRO:PR:Q9C689Proteomes:UP000006548
RefSeq:NP_175525.1STRING:3702.AT1G51130.1TAIR:AT1G51130UniGene:At.37881
UniProt:Q9C689
Coordinates (TAIR10) chr1:-:18939480..18941560
Molecular Weight (calculated) 45084.50 Da
IEP (calculated) 7.43
GRAVY (calculated) -0.71
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKTVKRESE ATGGKREADD EPEKLRSVKK EKQRKTEADS VRPDEPPPPQ EEEQGISDRR ILRSKYLSLQ NEINDCKDDL MKIDSDKFSR IINAVENLHQ
101: QVRKPREQIA DAEALLDIAN TLMSSVKSQS AHGVSPAEFV NALISGFGQG SLGIDTDETA QVSLKWKDLG FAVCSTVLVS CGCSTMLGPM DTELKQRKRA
201: PNRKRTKPGE GVRPDEVDDS QSEEKTDTDK NMTIMFNILG KKKRVQLENL VLNRRSFAQT VENLFALSFL AKDGRVEIIV DKSGSHFAMP RNAPDANVVM
301: SGEVIYNHFV FRLDFKDWKL MSEMVPLGEE LMPHRQTAVA SSSCPAASAP ASADFTQDTQ TTPIRKLSRN RGLVVQEETV VEDTPDKEGD GTRRRCKRRL
401: TSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)