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AT1G47250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 20S proteasome alpha subunit F2
Curator
Summary (TAIR10)
Encodes 20S proteasome subunit PAF2 (PAF2).
Computational
Description (TAIR10)
20S proteasome alpha subunit F2 (PAF2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: proteasome alpha subunit F1 (TAIR:AT5G42790.1); Has 5865 Blast hits to 5864 proteins in 456 species: Archae - 858; Bacteria - 0; Metazoa - 1951; Fungi - 1424; Plants - 745; Viruses - 0; Other Eukaryotes - 887 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G47250-MONOMERBioGrid:26353EC:3.4.25.1eggNOG:COG0638
eggNOG:KOG0863EMBL:AC079677EMBL:AF043527EMBL:AY057649
EMBL:AY141996EMBL:CP002684EMBL:Y13182EnsemblPlants:AT1G47250
EnsemblPlants:AT1G47250.1entrez:841128Gene3D:3.60.20.10GeneID:841128
Genevisible:O23712GO:GO:0000502GO:GO:0004298GO:GO:0005634
GO:GO:0005829GO:GO:0005886GO:GO:0006511GO:GO:0009506
GO:GO:0019773Gramene:AT1G47250.1hmmpanther:PTHR11599hmmpanther:PTHR11599:SF12
HOGENOM:HOG000091080InParanoid:O23712IntAct:O23712InterPro:IPR000426
InterPro:IPR001353InterPro:IPR023332InterPro:IPR029055KEGG:ath:AT1G47250
KO:K02725MEROPS:T01.976OMA:XNVSIGIPaxDb:O23712
Pfam:O23712Pfam:PF00227Pfam:PF10584Pfscan:PS51475
PhylomeDB:O23712PIR:T51975PRIDE:O23712PRO:PR:O23712
PROSITE:PS00388PROSITE:PS51475ProteinModelPortal:O23712Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_175158.1
scanprosite:PS00388SMART:SM00948SMR:O23712STRING:3702.AT1G47250.1
SUPFAM:SSF56235TAIR:AT1G47250tair10-symbols:PAF2UniGene:At.48280
UniProt:O23712
Coordinates (TAIR10) chr1:+:17319220..17320900
Molecular Weight (calculated) 30411.60 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.38
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRNQYDTDV TTWSPTGRLF QVEYAMEAVK QGSAAIGLRS RSHVVLACVN KAQSELSSHQ RKIFKVDDHI GVAIAGLTAD GRVLSRYMRS ESINHSFTYE
101: SPLPVGRLVV HLADKAQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS GNYFEYQAFA IGSRSQAAKT YLERKFESFQ ESSKEDLIKD AIMAIRETLQ
201: GETLKSSLCT VSVLGVDEPF HFLDQESIQK VIDTFEKVPE EEEDAGEGEA EPEAAPGAAG TGEQGGSGDQ DVAPMEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)