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AT1G30280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: J-domain protein required for chloroplast accumulation response 1 (TAIR:AT1G75100.1); Has 2071 Blast hits to 1585 proteins in 232 species: Archae - 0; Bacteria - 49; Metazoa - 766; Fungi - 302; Plants - 290; Viruses - 69; Other Eukaryotes - 595 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YGT5eggNOG:KOG0431EMBL:AC073506EMBL:AY070092
EMBL:AY117364EMBL:CP002684EnsemblPlants:AT1G30280EnsemblPlants:AT1G30280.1
entrez:839908Gene3D:1.10.287.110GeneID:839908Gramene:AT1G30280.1
hmmpanther:PTHR23172hmmpanther:PTHR23172:SF36HOGENOM:HOG000152184InterPro:IPR001623
KEGG:ath:AT1G30280OMA:EEDDNTHPhylomeDB:Q9C752PIR:B86427
Proteomes:UP000006548RefSeq:NP_174319.1SMR:Q9C752STRING:3702.AT1G30280.1
SUPFAM:SSF46565TAIR:AT1G30280UniGene:At.28397UniProt:Q9C752
Coordinates (TAIR10) chr1:-:10662851..10664570
Molecular Weight (calculated) 50709.20 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.91
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MDESWRMKMG LSVDPFFSIA RKSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEIFQPPGTF SSGGSLASSK SHGRNLPAFR IPSGGEGFYD
101: GVFGGRGGSA KEGSKKQSSM TKPRSNSSSM LSSEEASPHY PPPAAASGDD SGFSSFTSRL RPLNVPSRSH KRESKKQSFS AVPKAKDSFS GQNNTPEKAD
201: FYYKKTHFGG SRRASPETIS LDPNSFRRMD DYGPSSPASS PVSSFICEEE DDNTHAKQRT NRDCKVEEVV VEDEEDEEEE EMSSYVIEIN SDRFDRYREE
301: GGGGGGNSDS NDMDEAIAWA KERSQRPEAK QTEEDVIDSR RSEEEPKSEE EMEMEMKDEE IRIWLTGKET NIRLLLSTLH HVLWSNSNWD SIPLANLRDG
401: SQVKKAYQRA RLCLHPDKLQ QRGGTSPIQK SVASRVFAIL QEAWAVYVTN EGLSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)