suba logo
AT1G28210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock family protein
Curator
Summary (TAIR10)
DnaJ homolog AtJ1 (atj)
Computational
Description (TAIR10)
ATJ1; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095), Chaperone DnaJ (InterPro:IPR012724); BEST Arabidopsis thaliana protein match is: gametophytic factor 2 (TAIR:AT5G48030.1); Has 28161 Blast hits to 27196 proteins in 3463 species: Archae - 195; Bacteria - 10792; Metazoa - 4386; Fungi - 2267; Plants - 2523; Viruses - 17; Other Eukaryotes - 7981 (source: NCBI BLink).
Protein Annotations
BioGrid:24950eggNOG:COG0484eggNOG:KOG0715EMBL:AC021044
EMBL:AK118226EMBL:CP002684EMBL:U16246EnsemblPlants:AT1G28210
EnsemblPlants:AT1G28210.1entrez:839715ExpressionAtlas:Q38813Gene3D:1.10.287.110
Gene3D:2.10.230.10GeneID:839715Genevisible:Q38813GO:GO:0003676
GO:GO:0005524GO:GO:0005739GO:GO:0006457GO:GO:0008270
GO:GO:0009408HAMAP:MF_01152hmmpanther:PTHR24078hmmpanther:PTHR24078:SF247
HOGENOM:HOG000226717InParanoid:Q38813InterPro:IPR001305InterPro:IPR001623
InterPro:IPR002939InterPro:IPR008971InterPro:IPR012724InterPro:IPR018253
KEGG:ath:AT1G28210PaxDb:Q38813Pfam:PF00226Pfam:PF00684
Pfam:PF01556Pfam:Q38813Pfscan:PS50076Pfscan:PS51188
PhylomeDB:Q38813PIR:B86408PIR:S71190PRIDE:Q38813
PRINTS:PR00625PRO:PR:Q38813PROSITE:PS00636PROSITE:PS50076
PROSITE:PS51188ProteinModelPortal:Q38813Proteomes:UP000006548RefSeq:NP_174142.1
RefSeq:NP_849719.1scanprosite:PS00636SMART:SM00271SMR:Q38813
STRING:3702.AT1G28210.2SUPFAM:SSF46565SUPFAM:SSF49493SUPFAM:SSF57938
TAIR:AT1G28210tair10-symbols:ATJ1UniGene:At.10482UniProt:Q38813
Coordinates (TAIR10) chr1:+:9854598..9859884
Molecular Weight (calculated) 45680.70 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.56
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRFNWVLRH VQARRTFDSA IGLRQGSQKP LFERYIHATG INNSSARNYY DVLGVSPKAT REEIKKSFHE LAKKFHPDTN RNNPSAKRKF QEIREAYETL
101: GNSERREEYD KLQYRNSDYV NNDGGDSERF RRAYQSNFSD TFHKIFSEIF ENNQIKPDIR VELSLSLSEA AEGCTKRLSF DAYVFCDSCD GLGHPSDAAM
201: SICPTCRGVG RVTIPPFTAS CQTCKGTGHI IKEYCMSCRG SGIVEGTKTA ELVIPGGVES EATITIVGAG NVSSRTSQPG NLYIKLKVAN DSTFTRDGSD
301: IYVDANISFT QAILGGKVVV PTLSGKIQLD IPKGTQPDQL LVLRGKGLPK QGFFVDHGDQ YVRFRVNFPT EVNERQRAIL EEFAKEEINN ELSDSAEGSW
401: LYQKLSTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)