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AT1G24090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.767
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNase H family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0328eggNOG:ENOG410IEMWEMBL:CP002684EnsemblPlants:AT1G24090
EnsemblPlants:AT1G24090.1entrez:839020Gene3D:3.30.420.10Gene3D:3.40.970.10
GeneID:839020GO:GO:0003676GO:GO:0004523Gramene:AT1G24090.1
hmmpanther:PTHR33033hmmpanther:PTHR33033:SF11InParanoid:F4I7R5InterPro:IPR002156
InterPro:IPR009027InterPro:IPR011320InterPro:IPR012337KEGG:ath:AT1G24090
OMA:DETCFIEPaxDb:F4I7R5Pfam:PF13456Pfscan:PS50879
PRIDE:F4I7R5PROSITE:PS50879ProteinModelPortal:F4I7R5Proteomes:UP000006548
RefSeq:NP_173819.2SMR:F4I7R5STRING:3702.AT1G24090.1SUPFAM:SSF53098
SUPFAM:SSF55658TAIR:AT1G24090UniGene:At.41486UniProt:F4I7R5
Coordinates (TAIR10) chr1:+:8520834..8522737
Molecular Weight (calculated) 38547.20 Da
IEP (calculated) 7.81
GRAVY (calculated) -0.16
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)