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AT1G21190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.583
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G76860.1); Has 1267 Blast hits to 1267 proteins in 306 species: Archae - 319; Bacteria - 0; Metazoa - 370; Fungi - 215; Plants - 174; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111PB8eggNOG:KOG3460EMBL:AC036104EMBL:AF334722
EMBL:AK227392EMBL:CP002684EnsemblPlants:AT1G21190EnsemblPlants:AT1G21190.1
entrez:838714GeneID:838714Genevisible:Q9LMN4GO:GO:0000398
GO:GO:0000932GO:GO:0003723GO:GO:0005688GO:GO:0033962
GO:GO:0046540GO:GO:0071011GO:GO:0071013GO:GO:1990726
Gramene:AT1G21190.1hmmpanther:PTHR13110HOGENOM:HOG000223550InParanoid:Q9LMN4
IntAct:Q9LMN4InterPro:IPR001163InterPro:IPR010920KEGG:ath:AT1G21190
KO:K12622OMA:EEIYKASPaxDb:Q9LMN4Pfam:PF01423
Pfam:Q9LMN4PhylomeDB:Q9LMN4PIR:B86345PRIDE:Q9LMN4
PRO:PR:Q9LMN4ProteinModelPortal:Q9LMN4Proteomes:UP000006548Reactome:R-ATH-430039
Reactome:R-ATH-72163RefSeq:NP_173542.1SMART:SM00651SMR:Q9LMN4
STRING:3702.AT1G21190.1SUPFAM:SSF50182TAIR:AT1G21190UniGene:At.15544
UniProt:Q9LMN4
Coordinates (TAIR10) chr1:-:7419989..7420856
Molecular Weight (calculated) 11253.60 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.21
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MSVEEDATVR EPLDLIRLSI EERIYVKLRS DRELRGKLHA FDQHLNMILG DVEEVITTIE IDDETYEEIV RTTKRTVPFL FVRGDGVILV SPPLRTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)