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AT1G15460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.892
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HCO3- transporter family
Curator
Summary (TAIR10)
Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.
Computational
Description (TAIR10)
REQUIRES HIGH BORON 4 (BOR4); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1); Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0; Bacteria - 4; Metazoa - 1965; Fungi - 314; Plants - 231; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPHDeggNOG:KOG1172EMBL:AC007591EMBL:AY069887
EMBL:CP002684EnsemblPlants:AT1G15460EnsemblPlants:AT1G15460.1entrez:838116
GeneID:838116Genevisible:Q9XI23GO:GO:0005452GO:GO:0005886
GO:GO:0016021GO:GO:0035445GO:GO:0046713GO:GO:0080029
GO:GO:0080139Gramene:AT1G15460.1hmmpanther:PTHR11453hmmpanther:PTHR11453:SF48
HOGENOM:HOG000015213InParanoid:Q9XI23InterPro:IPR003020InterPro:IPR011531
KEGG:ath:AT1G15460OMA:NDSKRGVPANTHER:PTHR11453PaxDb:Q9XI23
Pfam:PF00955Pfam:Q9XI23PhylomeDB:Q9XI23PRIDE:Q9XI23
PRO:PR:Q9XI23ProteinModelPortal:Q9XI23Proteomes:UP000006548Reactome:R-ATH-1237044
Reactome:R-ATH-1247673Reactome:R-ATH-425381RefSeq:NP_172999.1SMR:Q9XI23
STRING:3702.AT1G15460.1TAIR:AT1G15460tair10-symbols:ATBOR4tair10-symbols:BOR4
TMHMM:TMhelixUniGene:At.28440UniProt:Q9XI23
Coordinates (TAIR10) chr1:-:5310196..5313376
Molecular Weight (calculated) 76704.70 Da
IEP (calculated) 7.88
GRAVY (calculated) 0.09
Length 683 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEERVDSSK RLFRGIVADL RGRALCYKED WVAGLRSGFG ILAPTTYIFF ASALPVIAFG EQLSRDTEGA LSTVETLAST ALCGVIHSIL GGQPLLILGV
101: AEPTVLMYVY LYNFAIGRPE LGKQLYLAWA AWVCVWTALL LFVMAILNTA DIINRFTRVA GELFGMLISV LFIQQAIKGM VSEFGMPKDE DSKLEKYKFE
201: WLYTNGLLGL IFTFGLLYTA LKSRKARSWR YGTGWYRSFI ADYGVPLMVV VWTALSFSTP SKLPSGVPRR LFSPLPWDSP SLSHWTVIKD MGKVSPGYIF
301: AAFIPALMIA GLYFFDHSVA SQLAQQKEFN LKKPSAYHYD ILLLGFMTLI CGLLGLPPSN GVLPQSPMHT KSLAVLKRQL IRRKMVKTAK ESIRKRETSS
401: QVYENMQEVF IEMDKSPLAQ TDPSVIIELQ DLKEAVMKSN DEEREGDEES GFDPEKHLDA YLPVRVNEQR VSNLLQSLLV AGAVLAMPAI KLIPTSILWG
501: YFAYMAIDSL PGNQFFERLT LLFVPTSRRF KVLEGAHASF VEKVPYKSMA AFTLLQIFYF GLCYGVTWIP VAGIMFPVPF FLLIAIRQYI LPKLFNPAHL
601: RELDAAEYEE IPGTPRNPLE LSFRSNDSKR GVQEGDAEIL DELTTSRGEL KVRTLNLNED KGNQIYPKEK VKAGDGDMST TRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)