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AT1G13250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.521
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : galacturonosyltransferase-like 3
Curator
Summary (TAIR10)
Encodes a protein with putative galacturonosyltransferase activity.
Computational
Description (TAIR10)
galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410IF5ZeggNOG:ENOG410YG1MEMBL:KJ139010
EnsemblPlants:AT1G13250EnsemblPlants:AT1G13250.1entrez:837885ExpressionAtlas:W8Q3T2
Gene3D:3.90.550.10GeneID:837885GO:GO:0016757Gramene:AT1G13250.1
hmmpanther:PTHR13778hmmpanther:PTHR13778:SF4InterPro:IPR002495InterPro:IPR029044
KEGG:ath:AT1G13250OMA:QHASCPEPaxDb:W8Q3T2Pfam:PF01501
Pfam:Q0V7R1Pfscan:PS51257PhylomeDB:W8Q3T2ProteinModelPortal:W8Q3T2
RefSeq:NP_563925.1SMR:W8Q3T2STRING:3702.AT1G13250.1SUPFAM:SSF53448
tair10-symbols:GATL3TMHMM:TMhelixUniGene:At.22620UniPathway:UPA00845
UniProt:Q0V7R1UniProt:W8Q3T2
Coordinates (TAIR10) chr1:-:4528965..4530002
Molecular Weight (calculated) 39854.30 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.12
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLRLRLCL LLLLPITISC VTVTLTDLPA FREAPAFRNG RECSKTTWIP SDHEHNPSII HIAMTLDAIY LRGSVAGVFS VLQHASCPEN IVFHFIATHR
101: RSADLRRIIS STFPYLTYHI YHFDPNLVRS KISSSIRRAL DQPLNYARIY LADLLPIAVR RVIYFDSDLV VVDDVAKLWR IDLRRHVVGA PEYCHANFTN
201: YFTSRFWSSQ GYKSALKDRK PCYFNTGVMV IDLGKWRERR VTVKLETWMR IQKRHRIYEL GSLPPFLLVF AGDVEPVEHR WNQHGLGGDN LEGLCRNLHP
301: GPVSLLHWSG KGKPWLRLDS RRPCPLDSLW APYDLFRYSP LISDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)