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AT1G12010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Encodes a protein that appears to have 1-amino-cyclopropane-1-carboxylic acid oxidase activity based on mutant analyses.
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ACC oxidase 2 (TAIR:AT1G62380.1); Has 8592 Blast hits to 8546 proteins in 1001 species: Archae - 0; Bacteria - 1125; Metazoa - 104; Fungi - 1034; Plants - 4961; Viruses - 0; Other Eukaryotes - 1368 (source: NCBI BLink).
Protein Annotations
EC:1.14.17.4eggNOG:COG3491eggNOG:KOG0143EMBL:AC002131
EMBL:AF446874EMBL:AY052694EMBL:CP002684EnsemblPlants:AT1G12010
EnsemblPlants:AT1G12010.1entrez:837753Gene3D:2.60.120.330GeneID:837753
Genevisible:O65378GO:GO:0006952GO:GO:0009693GO:GO:0009815
GO:GO:0031418GO:GO:0046872GO:GO:0071398Gramene:AT1G12010.1
gramene_pathway:1.14.17.4gramene_pathway:ETHYL-PWYgramene_plant_reactome:1119334gramene_plant_reactome:6876126
hmmpanther:PTHR10209hmmpanther:PTHR10209:SF193HOGENOM:HOG000276735InParanoid:O65378
InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT1G12010
KO:K05933OMA:ASKAHYAPaxDb:O65378Pfam:O65378
Pfam:PF03171Pfam:PF14226Pfscan:PS51471PhylomeDB:O65378
PIR:B86255PRIDE:O65378PRO:PR:O65378PROSITE:PS51471
ProteinModelPortal:O65378Proteomes:UP000006548RefSeq:NP_172665.1SMR:O65378
STRING:3702.AT1G12010.1SUPFAM:SSF51197TAIR:AT1G12010UniGene:At.10629
UniPathway:UPA00384UniProt:O65378
Coordinates (TAIR10) chr1:+:4056274..4057670
Molecular Weight (calculated) 36533.80 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.43
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMNIKFPVI DLSKLNGEER DQTMALIDDA CQNWGFFELV NHGLPYDLMD NIERMTKEHY KKHMEQKFKE MLRSKGLDTL ETEVEDVDWE STFYLHHLPQ
101: SNLYDIPDMS NEYRLAMKDF GKRLEILAEE LLDLLCENLG LEKGYLKKVF HGTTGPTFAT KLSNYPPCPK PEMIKGLRAH TDAGGLILLF QDDKVSGLQL
201: LKDGDWVDVP PLKHSIVINL GDQLEVITNG KYKSVMHRVM TQKEGNRMSI ASFYNPGSDA EISPATSLVD KDSKYPSFVF DDYMKLYAGL KFQAKEPRFE
301: AMKNAEAAAD LNPVAVVETF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)