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AT1G09390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plastid 16207701
SwissProt : extracellular 16381842
TAIR : plastid 16207701
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G56670.1); Has 3339 Blast hits to 3301 proteins in 169 species: Archae - 0; Bacteria - 205; Metazoa - 0; Fungi - 26; Plants - 3101; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G09390-MONOMEREC:3.1.1.-eggNOG:ENOG410IK3DeggNOG:ENOG410YG8Q
EMBL:AC003970EMBL:BT002885EMBL:BT004397EMBL:CP002684
EnsemblPlants:AT1G09390EnsemblPlants:AT1G09390.1entrez:837461Gene3D:3.40.50.1110
GeneID:837461Genevisible:O80522GO:GO:0005576GO:GO:0009570
GO:GO:0016042GO:GO:0016788Gramene:AT1G09390.1hmmpanther:PTHR22835
hmmpanther:PTHR22835:SF275HOGENOM:HOG000237648InParanoid:O80522InterPro:IPR001087
InterPro:IPR013830KEGG:ath:AT1G09390OMA:HIKYTIEPaxDb:O80522
Pfam:O80522Pfam:PF00657PhylomeDB:O80522PIR:B86227
PRIDE:O80522PRO:PR:O80522ProteinModelPortal:O80522Proteomes:UP000006548
RefSeq:NP_172410.1STRING:3702.AT1G09390.1SUPFAM:SSF52266TAIR:AT1G09390
UniGene:At.27689UniGene:At.48172UniProt:O80522
Coordinates (TAIR10) chr1:+:3031264..3033415
Molecular Weight (calculated) 40478.90 Da
IEP (calculated) 7.92
GRAVY (calculated) 0.07
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLSLHSHS FLLVLLPFIL ILRQNLAVAG GCQVPPVIFN FGDSNSDTGG LVAGLGYSIG LPNGRSFFQR STGRLSDGRL VIDFLCQSLN TSLLNPYLDS
101: LVGSKFQNGA NFAIVGSSTL PRYVPFALNI QLMQFLHFKS RALELASISD PLKEMMIGES GFRNALYMID IGQNDIADSF SKGLSYSRVV KLIPNVISEI
201: KSAIKILYDE GGRKFWVHNT GPLGCLPQKL SMVHSKGFDK HGCLATYNAA AKLFNEGLDH MCRDLRTELK EANIVYVDIY AIKYDLIANS NNYGFEKPLM
301: ACCGYGGPPY NYNVNITCGN GGSKSCDEGS RFISWDGIHY TETANAIVAM KVLSMQHSTP PTPFHFFCGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)