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AT1G08390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.576
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYNSeggNOG:ENOG410Y3XAEMBL:AY090919EMBL:CP002684
EnsemblPlants:AT1G08390EnsemblPlants:AT1G08390.1entrez:837359GeneID:837359
Gramene:AT1G08390.1hmmpanther:PTHR33962hmmpanther:PTHR33962:SF1HOGENOM:HOG000006045
InterPro:IPR032245KEGG:ath:AT1G08390KO:K15365OMA:REAMWYL
Pfam:PF16100PhylomeDB:Q8RX36Proteomes:UP000006548RefSeq:NP_172315.1
SMR:Q8RX36STRING:3702.AT1G08390.1TAIR:AT1G08390UniGene:At.42263
UniProt:Q8RX36
Coordinates (TAIR10) chr1:+:2642220..2643103
Molecular Weight (calculated) 15210.60 Da
IEP (calculated) 4.77
GRAVY (calculated) 0.14
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYSLAAVKM LCSQLRDAKP TPSQNAASLG GVLFQRAWLQ GVLVPFSGGG GDNCLVLDDG TGLLELGLTN DFALRQWKSG MYVMVVGVYQ VRTGQIPLLK
101: VHKMVDLSVS PDREAMWYLE VMDAYRLFYE PLIQEFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)