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AT1G04610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : YUCCA 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
YUCCA 3 (YUC3); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: YUCCA 7 (TAIR:AT2G33230.1); Has 9657 Blast hits to 9637 proteins in 1196 species: Archae - 33; Bacteria - 4899; Metazoa - 784; Fungi - 1494; Plants - 670; Viruses - 0; Other Eukaryotes - 1777 (source: NCBI BLink).
Protein Annotations
EC:1.14.13.168eggNOG:COG2072eggNOG:KOG1399EMBL:AC002376
EMBL:AK228766EMBL:AY057104EMBL:BT011241EMBL:BT012546
EMBL:CP002684EnsemblPlants:AT1G04610EnsemblPlants:AT1G04610.1entrez:839474
Gene3D:3.50.50.60GeneID:839474Genevisible:O23024GO:GO:0004497
GO:GO:0004499GO:GO:0009851GO:GO:0050660GO:GO:0050661
GO:GO:0055114Gramene:AT1G04610.1gramene_pathway:2.1.1.-gramene_pathway:PWY-581
hmmpanther:PTHR23023hmmpanther:PTHR23023:SF141HOGENOM:HOG000240759InParanoid:O23024
InterPro:IPR000103InterPro:IPR020946InterPro:IPR023753KEGG:ath:AT1G04610
KO:K11816OMA:DIANRWKPaxDb:O23024Pfam:O23024
Pfam:PF00743PhylomeDB:O23024PIR:G86178PRIDE:O23024
PRINTS:PR00469PRO:PR:O23024ProteinModelPortal:O23024Proteomes:UP000006548
RefSeq:NP_171955.1SMR:O23024STRING:3702.AT1G04610.1SUPFAM:SSF51905
TAIR:AT1G04610tair10-symbols:YUC3TMHMM:TMhelixUniGene:At.10473
UniPathway:UPA00151UniProt:O23024
Coordinates (TAIR10) chr1:+:1279524..1281331
Molecular Weight (calculated) 48750.00 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.23
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MYGNNNKKSI NITSMFQNLI PEGSDIFSRR CIWVNGPVIV GAGPSGLAVA AGLKREGVPF IILERANCIA SLWQNRTYDR LKLHLPKQFC QLPNYPFPDE
101: FPEYPTKFQF IQYLESYAAN FDINPKFNET VQSAKYDETF GLWRVKTISN MGQLGSCEFE YICRWIVVAT GENAEKVVPD FEGLEDFGGD VLHAGDYKSG
201: GRYQGKKVLV VGCGNSGMEV SLDLYNHGAN PSMVVRSAVH VLPREIFGKS TFELGVTMMK YMPVWLADKT ILFLARIILG NTDKYGLKRP KIGPLELKNK
301: EGKTPVLDIG ALPKIRSGKI KIVPGIIKFG KGKVELIDGR VLEIDSVILA TGYRSNVPSW LKDNDFFSDD GIPKNPFPNG WKGEAGLYAV GFTRKGLFGA
401: SLDAMSVAHD IANRWKEESK QQKKTAAARH RRCISHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)