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AT5G61850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : floral meristem identity control protein LEAFY (LFY)
Curator
Summary (TAIR10)
Encodes transcriptional regulator that promotes the transition to flowering.Involved in floral meristem development. LFY is involved in the regulation of AP3 expression, and appears to bring the F-box protein UFO to the AP3 promoter.
Computational
Description (TAIR10)
LEAFY (LFY); CONTAINS InterPro DOMAIN/s: Floricaula/leafy protein (InterPro:IPR002910); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE4MeggNOG:ENOG4110P9QEMBL:KF051022EnsemblPlants:AT5G61850EnsemblPlants:AT5G61850.1entrez:836307ExpressionAtlas:A0A023T4L8
GeneID:836307GO:GO:0003677GO:GO:0005634GO:GO:0006355Gramene:AT5G61850.1hmmpanther:PTHR36079hmmpanther:PTHR36079:SF1
InterPro:IPR002910KEGG:ath:AT5G61850ncoils:CoilOMA:DMQGDEHPANTHER:PTHR36079:SF1PaxDb:A0A023T4L8Pfam:PF01698
Pfam:Q00958PhylomeDB:A0A023T4L8RefSeq:NP_200993.1STRING:3702.AT5G61850.1tair10-symbols:LFYtair10-symbols:LFY3UniGene:At.55671
UniProt:A0A023T4L8UniProt:Q00958
Coordinates (TAIR10) chr5:+:24844295..24846933
Molecular Weight (calculated) 46584.90 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.66
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPEGFTSGL FRWNPTRALV QAPPPVPPPL QQQPVTPQTA AFGMRLGGLE GLFGPYGIRF YTAAKIAELG FTASTLVGMK DEELEEMMNS LSHIFRWELL
101: VGERYGIKAA VRAERRRLQE EEEEESSRRR HLLLSAAGDS GTHHALDALS QEGLSEEPVQ QQDQTDAAGN NGGGGSGYWD AGQGKMKKQQ QQRRRKKPML
201: TSVETDEDVN EGEDDDGMDN GNGGSGLGTE RQREHPFIVT EPGEVARGKK NGLDYLFHLY EQCREFLLQV QTIAKDRGEK CPTKVTNQVF RYAKKSGASY
301: INKPKMRHYV HCYALHCLDE EASNALRRAF KERGENVGSW RQACYKPLVN IACRHGWDID AVFNAHPRLS IWYVPTKLRQ LCHLERNNAV AAAAALVGGI
401: SCTGSSTSGR GGCGGDDLRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)