AT5G61150.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : leo1-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24603846..24607528 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71591.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.50 | ||||||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKGEKRSEM MLNLFGDNSE EEEIESEHEC NRRQPNYASD EAEGGVEPEG EGEAEVEVHG EAEAESDGEQ GDVELDPGES EGEREQSSQE ADPQEESEAR 101: DSDSDNKEEE HGGRVAKKRR QEVVESGSER SGEKHYESED EEVDQTRSPR SPSEEKEEVQ VAQSDVNIRN VFGSSDDEDA EEYVRNDVEQ DEHRSPIEDE 201: EGSEKDLRPD DMVLDDIIPE EDPQYESEAE HVEARYRERP VGPPLEVEVP FRPPPGDPVK MNMIKVSNIM GIDPKPFDAK TFVEEDTFMT DEPGAKNRIR 301: LDNNIVRHRF VKSRDGKTYS ESNARFVRWS DGSLQLLIGN EVLNITEQDA KEDQNHLFIK HEKGILQSQG RILKKMRFTP SSLTSNSHRL LTAIVESRQK 401: KAFKVKNCVT DIDPEREKEK REKAESQNLK ASTKLSQARE KIKRKYPLPV ERRQLSTGYL EDALDEDDED YRSNRGYEED LEAEAQRERR ILNAKKSHKG 501: IPGRSSMTSA RPSRRQMEYS ESEREESEYE TEEEEEEKSP ARGRGKDSED EYEEDAEEDE EERGKSNRYS DEDEEEEEGG RAEKDHRGSG RKRKGIESDE 601: EESPPRKAPT HRRKAVIDDS DED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)