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AT5G61030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich RNA-binding protein 3
Curator
Summary (TAIR10)
encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
Computational
Description (TAIR10)
glycine-rich RNA-binding protein 3 (GR-RBP3); FUNCTIONS IN: RNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 5 (TAIR:AT1G74230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AB006696EMBL:AB493804EMBL:AY060565EMBL:AY125548EMBL:CP002688
EnsemblPlants:AT5G61030EnsemblPlants:AT5G61030.1entrez:836224Gene3D:3.30.70.330GeneID:836224Genevisible:Q9FNR1GO:GO:0003697
GO:GO:0003723GO:GO:0005507GO:GO:0005524GO:GO:0005739GO:GO:0009409GO:GO:0080156Gramene:AT5G61030.1
hmmpanther:PTHR24012HOGENOM:HOG000029199InParanoid:Q9FNR1InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9FNR1KEGG:ath:AT5G61030
KO:K12741ncoils:CoilOMA:YANDRTSPaxDb:Q9FNR1Pfam:PF00076Pfam:Q9FNR1Pfscan:PS50102
PRIDE:Q9FNR1PRO:PR:Q9FNR1PROSITE:PS50102ProteinModelPortal:Q9FNR1Proteomes:UP000006548RefSeq:NP_200911.1SMART:SM00360
SMR:Q9FNR1STRING:3702.AT5G61030.1SUPFAM:SSF54928TAIR:AT5G61030tair10-symbols:GR-RBP3UniGene:At.24064UniProt:Q9FNR1
Coordinates (TAIR10) chr5:+:24560870..24562152
Molecular Weight (calculated) 29986.60 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.47
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)