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AT5G58420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S4 (RPS4A) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1471eggNOG:KOG0378EMBL:AB025632EMBL:AF428285EMBL:AY070467EMBL:AY086206EMBL:AY143834
EMBL:CP002688EnsemblPlants:AT5G58420EnsemblPlants:AT5G58420.1entrez:835955GeneID:835955Genevisible:Q8VYK6GO:GO:0003735
GO:GO:0005730GO:GO:0005829GO:GO:0006412GO:GO:0016020GO:GO:0019843GO:GO:0022626GO:GO:0022627
Gramene:AT5G58420.1HAMAP:MF_00485hmmpanther:PTHR11581HOGENOM:HOG000231325InParanoid:Q8VYK6InterPro:IPR000876InterPro:IPR002942
InterPro:IPR005824InterPro:IPR013843InterPro:IPR013845InterPro:IPR018199InterPro:IPR032277iPTMnet:Q8VYK6KEGG:ath:AT5G58420
KO:K02987OMA:FVERDEYPANTHER:PTHR11581PaxDb:Q8VYK6Pfam:PF00467Pfam:PF00900Pfam:PF01479
Pfam:PF08071Pfam:PF16121Pfam:Q8VYK6Pfscan:PS50889PhylomeDB:Q8VYK6PIRSF:PIRSF002116PRIDE:Q8VYK6
PRO:PR:Q8VYK6ProDom:PD002667PROSITE:PS00528PROSITE:PS50889ProteinModelPortal:Q8VYK6Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_200650.1scanprosite:PS00528SMART:SM00739SMR:Q8VYK6STRING:3702.AT5G58420.1TAIR:AT5G58420UniGene:At.25091
UniGene:At.9748UniProt:Q8VYK6
Coordinates (TAIR10) chr5:+:23619599..23620896
Molecular Weight (calculated) 29817.70 Da
IEP (calculated) 10.89
GRAVY (calculated) -0.50
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)