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AT5G57330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose mutarotase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G61610.1); Has 1923 Blast hits to 1920 proteins in 763 species: Archae - 0; Bacteria - 1269; Metazoa - 39; Fungi - 135; Plants - 272; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-817-MONOMEReggNOG:COG0676eggNOG:KOG1594EMBL:AB019233EMBL:AY093119EMBL:BT003381EMBL:CP002688
EnsemblPlants:AT5G57330EnsemblPlants:AT5G57330.1entrez:835838Gene3D:2.70.98.10GeneID:835838GO:GO:0005829GO:GO:0005975
GO:GO:0009737GO:GO:0016853GO:GO:0030246Gramene:AT5G57330.1hmmpanther:PTHR11122hmmpanther:PTHR11122:SF11HOGENOM:HOG000283048
InterPro:IPR008183InterPro:IPR011013InterPro:IPR014718InterPro:IPR025532KEGG:ath:AT5G57330KO:K01792OMA:NLEPHGF
Pfam:PF01263PhylomeDB:Q9LVC5PIRSF:PIRSF016020Proteomes:UP000006548RefSeq:NP_200543.1SMR:Q9LVC5STRING:3702.AT5G57330.1
SUPFAM:SSF74650TAIR:AT5G57330UniGene:At.9593UniProt:Q9LVC5
Coordinates (TAIR10) chr5:+:23218392..23220664
Molecular Weight (calculated) 35449.00 Da
IEP (calculated) 5.91
GRAVY (calculated) -0.48
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MATERHHFEL AKGINGLDKI VLRESRGRSA EVYLYGSHVT SWKNENGEEL LHLSSKAIFK PPKPIRGGIP LCFPQFSNFG TLESHGFARN RIWEVEANPP
101: PLPLNSCSSA FVDLILRPTE DDLKIWPNNF EFRLRIALGT EGELTLTSRI RNTNSDGKPF TFTFAYHTYF SVSDISEVRV EGLETLDYLD NLKDRERFTE
201: QGDAITFESE VDKIYLSTPT KIAILDHEKK RTFVIRKDGL ADAVVWNPWD KKSKTISDLG DEDYKHMLCV EAAAIERPIT LKPGEEWKGR LELSAVPSSY
301: SSGQLDPKKV LE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)