AT5G54250.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.789 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclic nucleotide-gated cation channel 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cyclic nucleotide-gated cation channel 4 (CNGC4); FUNCTIONS IN: cation transmembrane transporter activity, cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: plant-type hypersensitive response; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Cyclic nucleotide-regulated ion channel family protein (TAIR:AT5G15410.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22025684..22029971 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79501.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.99 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||
| Length | 689 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATEQEFTRA SRFSRDSSSV GYYSEEDNTE EEDEEEEEME EIEEEEEEEE EEDPRIGLTC GGRRNGSSNN NKWMMLGRIL DPRSKWVREW NKVFLLVCAT 101: GLFVDPLFLY TLSVSDTCMC LLVDGWLALT VTALRSMTDL LHLWNIWIQF KIARRWPYPG GDSDGDTNKG GGTRGSTRVA PPYVKKNGFF FDLFVILPLP 201: QVVLWVVIPS LLKRGSVTLV VSVLLVTFLF QYLPKIYHSI RHLRRNATLS GYIFGTVWWG IALNMIAYFV AAHAAGACWY LLGVQRSAKC LKEQCENTIG 301: CDLRMLSCKE PVYYGTTVMV LDRARLAWAQ NHQARSVCLD INTNYTYGAY QWTIQLVSSE SRLEKILFPI FWGLMTLSTF GNLESTTEWS EVVFNIIVLT 401: SGLLLVTMLI GNIKVFLHAT TSKKQAMHLK MRNIEWWMKK RHLPIGFRQR VRNYERQRWA AMRGVDECEM VQNLPEGLRR DIKYHLCLDL VRQHMDDLVL 501: ENICDRVKSL IFTKGETIQK EGDAVQRMLF VVRGHLQSSQ LLRDGVKSCC MLGPGNFSGD ELLSWCLRRP FVERLPPSSS TLVTLETTEA FGLDAEDVKY 601: VTQHFRYTFV NEKVKRSARY YSPGWRTWAA VAVQLAWRRY KHRLTLTSLS FIRPRRPLSR CASLGEDKLR LYAAILTSPK PNPDDFDDY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)