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AT5G24460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHVAeggNOG:ENOG4111TCNEMBL:AB025641EMBL:AY062666
EMBL:AY093314EMBL:CP002688EnsemblPlants:AT5G24460EnsemblPlants:AT5G24460.1
entrez:832517GeneID:832517GO:GO:0005618GO:GO:0016787
Gramene:AT5G24460.1hmmpanther:PTHR36395HOGENOM:HOG000242071InterPro:IPR015797
KEGG:ath:AT5G24460OMA:HFWKWVSPhylomeDB:Q9FGE4Proteomes:UP000006548
RefSeq:NP_197834.1SUPFAM:SSF55811TAIR:AT5G24460UniGene:At.27486
UniGene:At.72008UniProt:Q9FGE4
Coordinates (TAIR10) chr5:+:8354815..8355717
Molecular Weight (calculated) 33450.50 Da
IEP (calculated) 9.65
GRAVY (calculated) -0.57
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MFVGPSPPHT PLVNRRNINN HRPRNATVTS ALPDIFLAAV SLLFLWSSPK PLVSLPPNRF SFPLNPRRRS ITAMSRRSPP PPPPTQRFAN PQSLSDWLES
101: RLPSDSFAAW GVKPGTKNVH NLWLELSDGE TSLADSTPPV RTVNVVTVRV IGKNGRILVE AHQELSDGSI RERFRPLSEK MKPEESPDEA VFRAIKEELG
201: SIFNGDGDNI GQRIKILPGT YNRRVEERNS LSYPGLPARY ALHSVNATVE GLPEQDFCTE EKEYEGGDST KDSVETLAAG NAVTVKRHYW KWVSPDSIRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)