AT5G04140.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamate synthase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glutamate synthase 1 (GLU1); FUNCTIONS IN: protein binding, glutamate synthase (ferredoxin) activity; INVOLVED IN: response to light stimulus, photorespiration; LOCATED IN: apoplast, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 2 (TAIR:AT2G41220.1); Has 17415 Blast hits to 17302 proteins in 2024 species: Archae - 267; Bacteria - 5686; Metazoa - 111; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 11012 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1130031..1138186 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 179931.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1648 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAMQSLSPVP KLLSTTPSSV LSSDKNFFFV DFVGLYCKSK RTRRRLRGDS SSSSRSSSSL SRLSSVRAVI DLERVHGVSE KDLSSPSALR PQVRFFTDIN 0101: FTNTQRAKFH PLWGSFKQVA NLEDILSERG ACGVGFIANL DNIPSHGVVK DALIALGCME HRGGCGADND SGDGSGLMSS IPWDFFNVWA KEQSLAPFDK 0201: LHTGVGMIFL PQDDTFMQEA KQVIENIFEK EGLQVLGWRE VPVNVPIVGK NARETMPNIQ QVFVKIAKED STDDIERELY ICRKLIERAV ATESWGTELY 0301: FCSLSNQTIV YKGMLRSEAL GLFYLDLQNE LYESPFAIYH RRYSTNTSPR WPLAQPMRFL GHNGEINTIQ GNLNWMQSRE ASLKAAVWNG RENEIRPFGN 0401: PRGSDSANLD SAAEIMIRSG RTPEEALMIL VPEAYKNHPT LSVKYPEVVD FYDYYKGQME AWDGPALLLF SDGKTVGACL DRNGLRPARY WRTSDNFVYV 0501: ASEVGVVPVD EAKVTMKGRL GPGMMIAVDL VNGQVYENTE VKKRISSFNP YGKWIKENSR FLKPVNFKSS TVMENEEILR SQQAFGYSSE DVQMVIESMA 0601: SQGKEPTFCM GDDIPLAGLS QRPHMLYDYF KQRFAQVTNP AIDPLREGLV MSLEVNIGKR GNILELGPEN ASQVILSNPV LNEGALEELM KDQYLKPKVL 0701: STYFDIRKGV EGSLQKALYY LCEAADDAVR SGSQLLVLSD RSDRLEPTRP SIPIMLAVGA VHQHLIQNGL RMSASIVADT AQCFSTHHFA CLVGYGASAV 0801: CPYLALETCR QWRLSNKTVA FMRNGKIPTV TIEQAQKNYT KAVNAGLLKI LSKMGISLLS SYCGAQIFEI YGLGQDVVDL AFTGSVSKIS GLTFDELARE 0901: TLSFWVKAFS EDTTKRLENF GFIQFRPGGE YHSNNPEMSK LLHKAVREKS ETAYAVYQQH LSNRPVNVLR DLLEFKSDRA PIPVGKVEPA VAIVQRFCTG 1001: GMSLGAISRE THEAIAIAMN RIGGKSNSGE GGEDPIRWKP LTDVVDGYSP TLPHLKGLQN GDIATSAIKQ VASGRFGVTP TFLVNADQLE IKVAQGAKPG 1101: EGGQLPGKKV SAYIARLRSS KPGVPLISPP PHHDIYSIED LAQLIFDLHQ INPNAKVSVK LVAEAGIGTV ASGVAKGNAD IIQISGHDGG TGASPISSIK 1201: HAGGPWELGL TETHQTLIAN GLRERVILRV DGGLKSGVDV LMAAAMGADE YGFGSLAMIA TGCVMARICH TNNCPVGVAS QREELRARFP GVPGDLVNYF 1301: LYVAEEVRGI LAQLGYNSLD DIIGRTELLR PRDISLVKTQ HLDLSYLLSS VGTPSLSSTE IRKQEVHTNG PVLDDDILAD PLVIDAIENE KVVEKTVKIC 1401: NVDRAACGRV AGVIAKKYGD TGFAGQVNLT FLGSAGQSFG CFLIPGMNIR LIGESNDYVG KGMAGGEIVV TPVEKIGFVP EEATIVGNTC LYGATGGQIF 1501: ARGKAGERFA VRNSLAEAVV EGTGDHCCEY MTGGCVVVLG KVGRNVAAGM TGGLAYLLDE DDTLLPKINR EIVKIQRVTA PAGELQLKSL IEAHVEKTGS 1601: SKGATILNEW EKYLPLFWQL VPPSEEDTPE ASAAYVRTST GEVTFQSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)