AT4G28990.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding protein-related | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); Has 1307 Blast hits to 1081 proteins in 160 species: Archae - 0; Bacteria - 36; Metazoa - 556; Fungi - 137; Plants - 464; Viruses - 16; Other Eukaryotes - 98 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14291205..14293018 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45329.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.81 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.29 | ||||||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSTEKEQTT QHHPPHISSL VVRPSGSNDR EDGRNAAGDY EPGEVSRDRP SFNRSDRYKG DNGELSRHHL FLSLQMLVIV YVLVNVFDNA LITITMLCKL 101: QMSIVLALKY LGHRTRASSS SPGRRGYEDH KHGSDLNHSG VPPRGRELSS RREAPGRHRD YSPPLARGGA GARPYRRGLD GPEPPHGRDG MSRNNISKVQ 201: PREGDWYCLD PLCRNLNFAR RESCYKCKRH RYAPANSPPL PRLLPPPMNH SPRRDFNGYR SPPRGWPRDY PPPRHDHPTW RDRERDRPHY SDHEYPPSRR 301: IASDWAHTEP LPKPHYDRRP PLSPPRGGRW GRVLRERSRS PPLRDVPPPP LRDGPPPSLR GGGPPLHRDY RRDSHFDRER RDDGRGGRGR MGNSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)