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AT4G24280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18385124 (2008): mitochondrion
  • PMID:17869214 (2007): plasma membrane
  • PMID:17137349 (2006): mitochondrion
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:14617066 (2003): nucleus
  • PMID:12938931 (2003): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast heat shock protein 70-1
Curator
Summary (TAIR10)
Involved in protein import into chloroplasts during early developmental stages.
Computational
Description (TAIR10)
chloroplast heat shock protein 70-1 (cpHsc70-1); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-2 (TAIR:AT5G49910.1); Has 36155 Blast hits to 36031 proteins in 4857 species: Archae - 160; Bacteria - 17964; Metazoa - 3544; Fungi - 1694; Plants - 1235; Viruses - 354; Other Eukaryotes - 11204 (source: NCBI BLink).
Protein Annotations
BioGrid:13820eggNOG:COG0443eggNOG:KOG0102EMBL:AL078637EMBL:AL161561EMBL:AY072138EMBL:BT001950
EMBL:CP002687EnsemblPlants:AT4G24280EnsemblPlants:AT4G24280.1entrez:828531Gene3D:1.20.1270.10Gene3D:2.60.34.10GeneID:828531
Genevisible:Q9STW6GO:GO:0005524GO:GO:0005634GO:GO:0005739GO:GO:0006457GO:GO:0009409GO:GO:0009507
GO:GO:0009570GO:GO:0009579GO:GO:0009941GO:GO:0016032GO:GO:0045036GO:GO:0046686Gramene:AT4G24280.1
HAMAP:MF_00332hmmpanther:PTHR19375hmmpanther:PTHR19375:SF204HOGENOM:HOG000228135InParanoid:Q9STW6InterPro:IPR012725InterPro:IPR013126
InterPro:IPR018181InterPro:IPR029047InterPro:IPR029048iPTMnet:Q9STW6KEGG:ath:AT4G24280KO:K03283ncoils:Coil
OMA:YSRSRRWPaxDb:Q9STW6Pfam:PF00012Pfam:Q9STW6PhylomeDB:Q9STW6PIR:T09891PRIDE:Q9STW6
PRINTS:PR00301PRO:PR:Q9STW6PROSITE:PS00297PROSITE:PS00329PROSITE:PS01036ProteinModelPortal:Q9STW6Proteomes:UP000006548
RefSeq:NP_194159.1scanprosite:PS00297scanprosite:PS00329scanprosite:PS01036SMR:Q9STW6STRING:3702.AT4G24280.1SUPFAM:SSF100920
SUPFAM:SSF100934SUPFAM:SSF53067TAIR:AT4G24280tair10-symbols:cpHsc70-1TIGRfam:TIGR02350TIGRFAMs:TIGR02350UniGene:At.25311
UniGene:At.67055UniProt:Q9STW6
Coordinates (TAIR10) chr4:+:12590094..12593437
Molecular Weight (calculated) 76512.30 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.32
Length 718 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAAQIHV LGGIGFASSS SSKRNLNGKG GTFMPRSAFF GTRTGPFSTP TSAFLRMGTR NGGGASRYAV GPVRVVNEKV VGIDLGTTNS AVAAMEGGKP
101: TIVTNAEGQR TTPSVVAYTK SGDRLVGQIA KRQAVVNPEN TFFSVKRFIG RKMNEVDEES KQVSYRVVRD ENNNVKLECP AINKQFAAEE ISAQVLRKLV
201: DDASRFLNDK VTKAVITVPA YFNDSQRTAT KDAGRIAGLE VLRIINEPTA ASLAYGFDRK ANETILVFDL GGGTFDVSVL EVGDGVFEVL STSGDTHLGG
301: DDFDKRVVDW LAAEFKKDEG IDLLKDKQAL QRLTEAAEKA KIELSSLTQT NMSLPFITAT ADGPKHIETT LTRAKFEELC SDLLDRVRTP VENSLRDAKL
401: SFKDIDEVIL VGGSTRIPAV QELVRKVTGK EPNVTVNPDE VVALGAAVQA GVLAGDVSDI VLLDVTPLSI GLETLGGVMT KIIPRNTTLP TSKSEVFSTA
501: ADGQTSVEIN VLQGEREFVR DNKSLGSFRL DGIPPAPRGV PQIEVKFDID ANGILSVSAV DKGTGKKQDI TITGASTLPK DEVDQMVQEA ERFAKDDKEK
601: RDAIDTKNQA DSVVYQTEKQ LKELGEKIPG EVKEKVEAKL QELKDKIGSG STQEIKDAMA ALNQEVMQIG QSLYNQPGAG GPGAGPSPGG EGASSGDSSS
701: SKGGDGDDVI DADFTDSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)