AT4G18905.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18900.1). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10360234..10362991 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55238.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.24 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITAVSWIPK GNLKAVPDVA EPPSKEELKE LIESGAFARN VEGSNEDEEE EIEEDGEEIS EVDHAKAVAE ALGKSSKSKA VSSSMEVDEV SQGLKELDMD 101: NYDEEDDEIE LFSSGMGDLY YPSNEMDPYL KDVDDEDDEE DIDDTTVKPT DSVIICARNE DDVSHLEVYL YEESSGSPNM YVHHHIIIPE FPLCTAWLDC 201: PLKGGEKGNF VAIGSKDTPT IEIWDLDVRD EVLPCIQLGG IEEMIVSKKK KSKKQKPVCA SNSSISSSSM ASSHTESVLG LAWNKEFRNI LASASADKKV 301: KVWDVATGTC KITMEHHTKE VQAVAWNHYA PEVLLSGSFD QTVVMKDGRQ PSHSGFKWSV MSDVESLAWD PHCEHSFVVS LEDGTVKGFD IRAAQSGSDS 401: DLNPTYTIQA HAQDRGVSSI SYNISTPNLL ATGSMDKSVK LWDLSNNEPS CIATHQPNAG AVFSISFAVD NPFLLAIGGS KGELHVWDTL LDANVARKYG 501: SNRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)