suba logo
AT3G02840.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to other organism, response to ozone; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 423 Blast hits to 423 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZ2eggNOG:ENOG41105F6EMBL:AC018363EMBL:AK118550EMBL:BT002533EMBL:BT008474EMBL:CP002686
EnsemblPlants:AT3G02840EnsemblPlants:AT3G02840.1entrez:821225Gene3D:1.25.10.10GeneID:821225GO:GO:0005634GO:GO:0005737
GO:GO:0010193Gramene:AT3G02840.1hmmpanther:PTHR22849hmmpanther:PTHR22849:SF43InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT3G02840
ncoils:CoilOMA:CEGATREPhylomeDB:Q9M8S5Proteomes:UP000006548RefSeq:NP_566184.1STRING:3702.AT3G02840.1SUPFAM:SSF48371
TAIR:AT3G02840UniGene:At.41071UniGene:At.48613UniProt:Q9M8S5
Coordinates (TAIR10) chr3:+:618480..619619
Molecular Weight (calculated) 42447.90 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.15
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLPWRSRGG VAKRRNQLIS GDISVVETKI PVQLRSPSRI ERIQSPRVLL TPRDAVEISR RLQNAAAREE YAECLEIVSK IKNLGRGGDT NKKCLVQNGS
101: VLALSSCFER FAAARDGHMR LLEEILFVLS SWLPLNRSEG FNKMGSTASL NCLVRFLNGK DAKTRQNAAF CIREVIAVDK RYVYALTDVE GACEGLVKII
201: RDSVSTSSTK ASLMVIYRAI SSNDKITEKF VKLGLVELIT EMMVNNAEKS VCERSLVVLN ATCDNEQGKE DVLRNALIVP LLVKKILRVS DLATQCSVSI
301: LWKLWKNKKD GECDDRLLVE ALQVGAFEKL LVLLQVGCED KTKEKASELL RNLNRCRNEI EKTNCVDSSM HLKNVKKSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)