AT2G40430.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.928 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has 706 Blast hits to 639 proteins in 197 species: Archae - 0; Bacteria - 32; Metazoa - 228; Fungi - 147; Plants - 47; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:16879527..16882365 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50913.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.31 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||
| Length | 449 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKRSKTSRK GKKAWRANIS SEDIEDFFEK TTRDALSGGN LSAAPSEDLF HVDKSHDLPV KRKIEKHRER VLRVDSILKK NPFVQLVPSS KPKLKKSKKT 101: IVIEDKAPKQ VQKSVGDDSV MADLWGDDSK GEHESNPRKI FKNPSIISAV EIEHPGCSYN PTTESHQDML AEAVAQEMQK VYKTELGPAP VPLTIEGDTL 201: SEDERYFLDV DNFSEGEDNE NVENEVSEAG IKLKENPFVQ LKPSSNTNLK KIEDKTPRQA QKSVGDDSVM VDLLGDDIKE DLKYFLEVGN VGEGEDNKDV 301: KIEVSEAGNN VSRKTKRVTR VELNKRCRQK ALRKKETKEK AKEKILNEID SLPNILEEIA KEDEDKQNKH LRRVIAKQEV LKIRPPRLGK YKFEAPPVQV 401: LLTEEMTGSL RKLKACCTLA RDRFKSLEKR GILVPSKQIR RLVFYGNDS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)