AT2G30520.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.838 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13002920..13005153 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60603.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVAKSNYIR KLIMESKDSD VTRINLSDIP GGPEIFEKAA KFCYGVNFEI TVQNVAALHC AAEFLQMTDK YCDNNLAGRT QDFLSQVALS SLSGAIVVLK 101: SCEILLPISR DLGIVRRCVD VVGAKACNEA MFPCRTPPNW WTEELCILDV DFFSDVVSSM KQRGVKPSSL ASAIITYTEK SLRDLVRDHS GRGVKYSDPG 201: DNESDERSQQ RDLVQSIVSL LPSDKGLFPV NFLCSLLRCA VFLDTSLTCK NELEKRISVV LEHVSVDDLL IPSFTYDGER LLDLDSVRRI ISAFVEKEKN 301: VGVFNGGDFN RGVCSVSLQR VAKTVDSYLA EIATYGDLTI SKFNAIANLV PKSARKSDDD LYRAIDIFLK AHPNLDEIER EKVCSSMDPL KLSYDARLHA 401: SQNKRLPVNI VLHALYYDQL KLRSGVAEQE ERAVVVLPEA LKTRSQLQAD TTLAKENEAL RSELMKMKMY VSDMQKNKNG AGASSSNSSS LVSSKKSKHT 501: FFSSVSKKLG KLNPFKNGSK DTSHIDEDLG GVDITKPRRR RFSIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)