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AT2G01070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lung seven transmembrane receptor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS1QeggNOG:KOG2568EMBL:CP002685EnsemblPlants:AT2G01070EnsemblPlants:AT2G01070.1entrez:814637ExpressionAtlas:F4IM73
GeneID:814637GO:GO:0005794GO:GO:0016021Gramene:AT2G01070.1hmmpanther:PTHR21229hmmpanther:PTHR21229:SF28InParanoid:F4IM73
InterPro:IPR009637OMA:VAWIVYEPANTHER:PTHR21229PaxDb:F4IM73Pfam:PF06814PRIDE:F4IM73ProteinModelPortal:F4IM73
Proteomes:UP000006548RefSeq:NP_178217.3STRING:3702.AT2G01070.1TAIR:AT2G01070TMHMM:TMhelixUniGene:At.42518UniGene:At.67640
UniProt:F4IM73
Coordinates (TAIR10) chr2:+:75596..77625
Molecular Weight (calculated) 55779.10 Da
IEP (calculated) 7.71
GRAVY (calculated) 0.18
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLGKLIQLS ALLCPFLLSL HFRIAGASAH IYSSQPFHDV GNSLLLYGGS EGIFASSRSL IRFENITLWR TITGKGHRSN GLVQAVIFEA SDRNNIGGSA
101: YGGQRSICCT PDLAKLQGCK QGEIIRIPSP HDPQWPILLP VRFKGKRSSA KMADTEILIT KTGIYNLLFI SCDPQLKGLK MTGKTVWKNP DGYLPGRMAP
201: LVNFYVYMSL AYLLLSAVWF FQYLRFRMDI LPLQHCITAV ILLGLLEMLF WYLDYANFNH TGMRPLALTT WVVTIGALRK TVSRILILCV SMGFGVVKST
301: LGGLTSKVLL VGVTYFIASE ILDIAEHVGI IDDMSGRSKL FLVLPDAFLD AFLILWIFTS LSKTLEQLQM KRTSVKLEIY RKFSNALAVM VVASVAWIVY
401: EVYFKATDPF NERWQTAWTI TAFWDVIAFL LLCIICYLWT PSQNSQRYAY SGDVDEENEE AQSLTGGKQD GDISLVKQEK NAESDREEDV EEDKRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)