AT1G63480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AT hook motif DNA-binding family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT1G63470.1); Has 860 Blast hits to 856 proteins in 70 species: Archae - 0; Bacteria - 8; Metazoa - 47; Fungi - 33; Plants - 756; Viruses - 1; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23539872..23541685 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38313.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 361 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGREAMAFP GSHSQYYLQR GAFTNLAPSQ VASGLHAPPP HTGLRPMSNP NIHHPQANNP GPPFSDFGHT IHMGVVSSAS DADVQPPPPP PPPEEPMVKR 101: KRGRPRKYGE PMVSNKSRDS SPMSDPNEPK RARGRPPGTG RKQRLANLGE WMNTSAGLAF APHVISIGAG EDIAAKVLSF SQQRPRALCI MSGTGTISSV 201: TLCKPGSTDR HLTYEGPFEI ISFGGSYLVN EEGGSRSRTG GLSVSLSRPD GSIIAGGVDM LIAANLVQVV ACSFVYGARA KTHNNNNKTI RQEKEPNEED 301: NNSEMETTPG SAAEPAASAG QQTPQNFSSQ GIRGWPGSGS GSGRSLDICR NPLTDFDLTR G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)