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AT1G61065.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.939
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G27435.1); Has 557 Blast hits to 557 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 557; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBT3eggNOG:ENOG41115IPEMBL:AF419584EMBL:AY079109
EMBL:CP002684EnsemblPlants:AT1G61065EnsemblPlants:AT1G61065.1entrez:842398
GeneID:842398GO:GO:0016021Gramene:AT1G61065.1hmmpanther:PTHR31769
hmmpanther:PTHR31769:SF16InterPro:IPR009606KEGG:ath:AT1G61065OMA:PGIRMSS
Pfam:PF06749PhylomeDB:Q8W576Proteomes:UP000006548RefSeq:NP_564769.1
TAIR:AT1G61065TMHMM:TMhelixUniGene:At.27389UniGene:At.52296
UniProt:Q8W576
Coordinates (TAIR10) chr1:-:22490430..22491330
Molecular Weight (calculated) 19866.50 Da
IEP (calculated) 9.72
GRAVY (calculated) 0.60
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVLLLLLV FVFDLIAFGL AVAAEQRRTT WQISRESRDL SYCVYDKDIA TGLGVGSFLV LLASQLLIMV ASRCLCCGRA LTPSGSRSWA IFLFITTWVF
101: FFIAQVCLLA GSVRNAYHTK YRVYFGNTSP SCRSLRKGVF GAGAAFIVLT GIVSELYYVT LSRAKDFQPS RDPGIRMSSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)