AT1G52870.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT4G03410.2); Has 1371 Blast hits to 1369 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 561; Fungi - 316; Plants - 329; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19685856..19687678 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41333.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.12 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||
| Length | 366 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAASLHTSI SPRSFLPLSK PSLKPHRSQI LLRNKQRNCV SCALIRDEID LIPVQSRDRT DHEEGSVVVM STETAVDGNE SVVVGFSAAT SEGQLSLEGF 101: PSSSSSGADL GDEKRRENEE MEKMIDRTIN ATIVLAAGSY AITKLLTIDH DYWHGWTLFE ILRYAPQHNW IAYEEALKQN PVLAKMVISG VVYSVGDWIA 201: QCYEGKPLFE IDRARTLRSG LVGFTLHGSL SHFYYQFCEE LFPFQDWWVV PVKVAFDQTV WSAIWNSIYF TVLGFLRFES PISIFKELKA TFLPMLTAGW 301: KLWPFAHLIT YGLVPVEQRL LWVDCVELIW VTILSTYSNE KSEARISESV IETSSSSTTT IDPSKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)