AT1G17720.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.728 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein phosphatase 2A, regulatory subunit PR55 | ||||||||||||
| Curator Summary (TAIR10) |
type 2A protein serine/threonine phosphatase 55 kDa B | ||||||||||||
| Computational Description (TAIR10) |
ATB BETA; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.3); Has 1042 Blast hits to 998 proteins in 278 species: Archae - 0; Bacteria - 71; Metazoa - 509; Fungi - 214; Plants - 122; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6093949..6098065 | ||||||||||||
| Molecular Weight (calculated) | 56178.70 Da | ||||||||||||
| IEP (calculated) | 5.61 | ||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||
| Length | 500 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGGDDAATS GPPPSLEWRF SQVFGERTAG EEVQEVDIIS AIEFDKSGDH LATGDRGGRV VLFERTDTKD HGGSRKDLEQ TDYPVRHPEF RYKTEFQSHE 101: PEFDYLKSLE IEEKINKIRW CQPANGALFL LSTNDKTIKY WKVQEKKIKK ISEMNIDPSE SSNIPPQLVT NGLPADKGHD YLSKDFSFPP GGIPSLRLPV 201: VTSQETNLVA RCRRVYAHAH DYHINSISNS SDGETFISAD DLRVNLWNLE ISNQSFNIVD VKPTNMEDLT EVITSAEFHP IHCNMLAYSS SKGSIRLIDM 301: RQSALCDSHT KLFEEPEAPG SRSFFTEIIA SISDIKFSKD GRYILSRDYM TLKLWDINMD SGPVASYQVH EHLRPRLCDL YENDSIFDKF ECCLSGDGLR 401: VATGSYSNLF RVFGASQGST EAATLEASKN PMRRQIQTPA RPSRSIGSMT RVVRRGSESP GTEANGNAYD FTTKLLHMAW HPTENSIACA AANSLYMYYA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)