AT1G05180.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.830 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AUXIN RESISTANT 1 (AXR1); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1498357..1501469 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48996.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||
| Length | 436 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLRFNLVTL GTISWSMRRV LANQKPNLFF TLVIATQLVE DSMLKLDRIC RDANVKLVLV RSYGLAGFVR ISVKEHPIID SKPDHFLDDL RLNNPWPELK 101: SFVETIDLNV SEPAAAHKHI PYVVILVKMA EEWAQSHSGN LPSTREEKKE FKDLVKSKMV STDEDNYKEA IEAAFKVFAP RGISSEVQKL INDSCAEVNS 201: NSSAFWVMVA ALKEFVLNEG GGEAPLEGSI PDMTSSTEHY INLQKIYLAK AEADFLVIEE RVKNILKKIG RDPSSIPKPT IKSFCKNARK LKLCRYRMVE 301: DEFRNPSVTE IQKYLADEDY SGAMGFYILL RAADRFAANY NKFPGQFDGG MDEDISRLKT TALSLLTDLG CNGSVLPDDL IHEMCRFGAS EIHVVSAFVG 401: GIASQEVIKL VTKQFVPMLG TYIFNGIDHK SQLLKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)