AT1G04300.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1148818..1153895 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117436.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||
| Length | 1055 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYE ITKREHRSNV FEAGGYKWYI LIYPQGCDVC NHLSLFLCVA 0101: NYDKLLPGWS QFAQFTISVL SQDLKKSKFS DTLHRFWKKE HDWGWKKFME LPKLKDGFID ESGCLTIEAK VQVIRERVDR PFRCLDCGYR RELVRVYFQN 0201: VEQICRRFVE EKRSKLGRLI EDKARWTSFG VFWLGMDQNS RRRMCREKVD VILKGVVKHF FVEKEVSSTL VMDSLYSGLK ALEGQTKNMK ARSRLLDAKQ 0301: LPAPIVSVDK DMFVLVDDVL LLLERAALEP LPPKDEKGRQ NRTKDGNDGE EVNKEADERD ERRLTELGRR TVEIFILSHI FSTKIEVAHQ EAIALKRQEE 0401: LIREEEEAWL AETEQRAKRG AAEREKKSKK KQAKQKRNKN KGKDKRKEEK VSFATHAKDL EENQNQNQND EEEKDSVTEK AQSSAEKPDT LGDVSDISDS 0501: VDGSADILQP DLEDRDSSSV LWDTDALEIH PPSSEGSSRG RGISISTPNG ITEGKSHSTM DDSSSTCSND SIRSGVTNGS YQGNSLNFRN QKSPNKGKNQ 0601: QVKAMTDAHS LASETDDQPS TLGTDPKGQN YSSEASNVGE SDWVVVSHIQ EPEGSRNRIP VGRERKTVQS IVNSVDMDRP KEKSTAVLSS PRNVAKNPSP 0701: LTQTKPEKKS ISTADGIPNR KVLATGPPSS SQVVLPSDIQ SQTVGLRADM QKLSAPKQPP ATTISRPSSA PIIPAMRPSP ITVSSSVQTT TSLPRSVSSA 0801: GRLGPDPSLH NQQTYTPQSY KNAIVGNSLG SSSSSFNHHP SSHGVVPTTL PSSSYSQAPT SSYQSSFPYS QDGLLWTGRS PSSVNMGMYN NTYSPAVTSN 0901: RSLNHMDVQI AQQQAQSMMT DEFPHLDIIN DLLEDEQCSN MVYNGSIFNP QPQVFNGQYS SYHGELLSGG RTRSFGEEGL HYMARGPYGT DGMMPRQWQM 1001: TNMDLSLPAM RSNGMEDGTS SAANYHHSYF GLDASNPSFT SGINGYTEFR PSNGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)