AT1G04300.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT5G43560.2); Has 16478 Blast hits to 11071 proteins in 944 species: Archae - 20; Bacteria - 1905; Metazoa - 5111; Fungi - 2223; Plants - 1025; Viruses - 104; Other Eukaryotes - 6090 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1148818..1153895 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120450.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||
| Length | 1082 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEAVDEDSG VGRSLEESSN GQHSQAGEAL SEWRSSGQVE NGTPSTSPSY WDIDDDDDYG LKPSELYGQY TWKIPKFSEI TKREHRSNVF EAGGYKWYIL 0101: IYPQGCDVCN HLSLFLCVAN YDKLLPGSFA ILEAGWSQFA QFTISVLSQD LKKSKFSDTL HRFWKKEHDW GWKKFMELPK LKDGFIDESG CLTIEAKVQV 0201: IRERVDRPFR CLDCGYRREL VRVYFQNVEQ ICRRFVEEKR SKLGRLIEDK ARWTSFGVFW LGMDQNSRRR MCREKVDVIL KGVVKHFFVE KEVSSTLVMD 0301: SLYSGLKALE GQTKNMKARS RLLDAKQLPA PIVSVDKDMF VLVDDVLLLL ERAALEPLPP KDEKGRQNRT KDGNDGEEVN KEADERDERR LTELGRRTVE 0401: IFILSHIFST KIEVAHQEAI ALKRQEELIR EEEEAWLAET EQRAKRGAAE REKKSKKKQA KQKRNKNKGK DKRKEEKVSF ATHAKDLEEN QNQNQNDEEE 0501: KDSVTEKAQS SAEKPDTLGD VSDISDSVDG SADILQPDLE DRDSSSVLWD TDALEIHPPS SEGSSRGRGI SISTPNGITE GKSHSTMDDS SSTCSNDSIR 0601: SGVTNGSYQG NSLNFRNQKS PNKGKNQQVK AMTDAHSLAS ETDDQPSTLG TDPKGQNYSS EASNVGESDW VVVSHIQEPE GSRNRIPVGR ERKTVQSIVN 0701: SVDMDRPKEK STAVLSSPRN VAKNPSPLTQ TKPEKKSIST ADGIPNRKVL ATGPPSSSQV VLPSDIQSQT VGLRADMQKL SAPKQPPATT ISRPSSAPII 0801: PAMRPSPITV SSSVQTTTSL PRSVSSAGRL GPDPSLHNQQ TYTPQSYKNA IVGNSLGSSS SSFNHHPSSH GVVPTTLPSS SYSQAPTSSY QSSFPYSQDG 0901: LLWTGRSPSS VNMGMYNNTY SPAVTSNRSL NHMDVQIAQQ QAQSMMTDEF PHLDIINDLL EDEQCSNMVY NGSIFNPQPQ VFNGQYSSYH GELLSGGRTR 1001: SFGEEGLHYM ARGPYGTDGM MPRQWQMTNM DLSLPAMRSN GMEDGTSSAA NYHHSYFGLD ASNPSFTSGI NGYTEFRPSN GH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)