AT1G04080.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PRP39; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1051803..1056550 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91156.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 823 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDSEAMVSE GYTSAPYGDY NASAATVEST GQETAPIVDA SHSVNNDSLV NGTAPVENGS ATDNVAVTAP AAEHGDNTGS TLSTEEERLW NIVRANSLEF 101: NAWTALIDET ERIAQDNIAK IRKVYDAFLA EFPLCYGYWK KFADHEARVG AMDKVVEVYE RAVLGVTYSV DIWLHYCTFA INTYGDPETI RRLFERALVY 201: VGTDFLSSPL WDKYIEYEYM QQDWSRVALI YTRILENPIQ NLDRYFSSFK ELAETRPLSE LRSAEESAAA AVAVAGDASE SAASESGEKA DEGRSQVDGS 301: TEQSPKLESA SSTEPEELKK YVGIREAMYI KSKEFESKII GYEMAIRRPY FHVRPLNVAE LENWHNYLDF IERDGDFNKL SSIWCIICLI GFPLDQATFK 401: WEITETKACA SICSNVINAG VFLTFCLSGK EGPSVVKLYE RCVVTCANYP EYWIRYVTNM EASGSADLAE NALARATQVF VKKQPEIHLF AARLKEQNGD 501: IAGARAAYQL VHSEISPGLL EAVIKHANME YRLGNLDDAF SLYEQVIAVE KGKEHSTILP LLYAQYSRFS YLVSRDAEKA RRIIVEALDH VQPSKPLMEA 601: LIHFEAIQPP PREIDYLEPL VEKVIKPDAD AQNIASSTER EELSLIYIEF LGIFGDVKSI KKAEDQHVKL FYPHRSTSEL KKRSADDFLA SDRTKMAKTY 701: NGTPPAQPVS NAYPNAQAQW SGGYAAQPQT WPPAQAAPAQ PQQWNPAYGQ QAAYGAYGGY PAGYTAPQAP TPVPQAAAYG AYPAQTYPTQ SYAPPVAAAA 801: PAAAPVQQPA AAVAPQAYYN TYY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)