AT1G04080.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.956 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1); Has 1033 Blast hits to 958 proteins in 272 species: Archae - 0; Bacteria - 147; Metazoa - 339; Fungi - 222; Plants - 216; Viruses - 4; Other Eukaryotes - 105 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1053171..1056550 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64945.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 582 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLLGRLFER ALVYVGTDFL SSPLWDKYIE YEYMQQDWSR VALIYTRILE NPIQNLDRYF SSFKELAETR PLSELRSAEE SAAAAVAVAG DASESAASES 101: GEKADEGRSQ VDGSTEQSPK LESASSTEPE ELKKYVGIRE AMYIKSKEFE SKIIGYEMAI RRPYFHVRPL NVAELENWHN YLDFIERDGD FNKVVKLYER 201: CVVTCANYPE YWIRYVTNME ASGSADLAEN ALARATQVFV KKQPEIHLFA ARLKEQNGDI AGARAAYQLV HSEISPGLLE AVIKHANMEY RLGNLDDAFS 301: LYEQVIAVEK GKEHSTILPL LYAQYSRFSY LVSRDAEKAR RIIVEALDHV QPSKPLMEAL IHFEAIQPPP REIDYLEPLV EKVIKPDADA QNIASSTERE 401: ELSLIYIEFL GIFGDVKSIK KAEDQHVKLF YPHRSTSELK KRSADDFLAS DRTKMAKTYN GTPPAQPVSN AYPNAQAQWS GGYAAQPQTW PPAQAAPAQP 501: QQWNPAYGQQ AAYGAYGGYP AGYTAPQAPT PVPQAAAYGA YPAQTYPTQS YAPPVAAAAP AAAPVQQPAA AVAPQAYYNT YY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)