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AT4G22517.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Encodes a Protease inhibitor/seed storage/LTP family protein
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G22513.1); Has 590 Blast hits to 590 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 590; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G22517EnsemblPlants:AT4G22517.1entrez:5008159
GeneID:5008159GO:GO:0008233Gramene:AT4G22517.1hmmpanther:PTHR31731
HOGENOM:HOG000237797InParanoid:A8MQX9InterPro:IPR016140InterPro:IPR027923
KEGG:ath:AT4G22517OMA:CACEALRPaxDb:A8MQX9Pfam:PF14547
PhylomeDB:A8MQX9ProteinModelPortal:A8MQX9Proteomes:UP000006548RefSeq:NP_001078429.1
SMART:SM00499SMR:A8MQX9SUPFAM:SSF47699TAIR:AT4G22517
TMHMM:TMhelixUniGene:At.65415UniProt:A8MQX9
Coordinates (TAIR10) chr4:+:11856810..11857157
Molecular Weight (calculated) 12223.50 Da
IEP (calculated) 8.41
GRAVY (calculated) 0.94
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKNMTTIM ALFLTFNLVF LGFTSAQPVC PLNRSDLGIC VNVLGLISLT TSNVARCCSI LAGLNNTPLV SVCACEAVRL NILNLLGITV NLNLRLNGLL
101: GLCRLPVQPG FNCLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)