AT4G30140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the GDSL lipase/esterase family of proteins that functions as cutinase. Expressed in pollen and at the zone of lateral root emergence. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CUTICLE DESTRUCTING FACTOR 1 (CDEF1); FUNCTIONS IN: cutinase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: extracellular space; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G19050.1); Has 3175 Blast hits to 3140 proteins in 124 species: Archae - 0; Bacteria - 141; Metazoa - 0; Fungi - 4; Plants - 3022; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14738603..14740548 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37472.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 348 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEGESKALW IILATVFAVA AVAPAVHGQQ TPCYFVFGDS VFDNGNNNAL NTKAKVNYLP YGIDYFQGPT GRFSNGRNIP DVIAELAGFN NPIPPFAGAS 101: QAQANIGLNY ASGAGGIREE TSENMGERIS LRQQVNNHFS AIITAAVPLS RLRQCLYTIN IGSNDYLNNY FLSPPTLARR LFNPDQYARS LISLYRIYLT 201: QLYVLGARNV ALFGIGKIGC TPRIVATLGG GTGCAEEVNQ AVIIFNTKLK ALVTDFNNKP GAMFTYVDLF SGNAEDFAAL GITVGDRSCC TVNPGEELCA 301: ANGPVCPDRN KFIFWDNVHT TEVINTVVAN AAFNGPIASP FNISQLVN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)