AT1G75120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.516 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
REDUCED RESIDUAL ARABINOSE 1 (RRA1); LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: meristem; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 293 Blast hits to 288 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28197022..28198656 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45477.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVRKEKVQP FRECGIAIAV LVGIFIGCVC TILIPNDFVN FRSSKVASAS CESPERVKMF KAEFAIISEK NGELRKQVSD LTEKVRLAEQ KEVIKAGPFG 101: TVTGLQTNPT VAPDESANPR LAKLLEKVAV NKEIIVVLAN NNVKPMLEVQ IASVKRVGIQ NYLVVPLDDS LESFCKSNEV AYYKRDPDNA IDVVGKSRRS 201: SDVSGLKFRV LREFLQLGYG VLLSDVDIVF LQNPFGHLYR DSDVESMSDG HDNNTAYGFN DVFDDPTMTR SRTVYTNRIW VFNSGFFYLR PTLPSIELLD 301: RVTDTLSKSG GWDQAVFNQH LFYPSHPGYT GLYASKRVMD VYEFMNSRVL FKTVRKDEEM KKLKPVIIHM NYHSDKLERM QAAVEFYVNG KQDALDRFRD 401: GS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)