AT4G22485.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a Protease inhibitor/seed storage/LTP family protein | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT4G22470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11844506..11846476 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68203.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.26 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||
| Length | 656 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPKGSTKTL ALFLTLISIL LLGQTQAQNR PYLRPPPPRI PPPPCPVCTC PEPSPPPPPT VTPQIPPTLP PTIPPETPPT GPPATPPTEV LPTGPPTLPP 101: QTPPTIPPEI PPNTPPQTPP TLPPNTPPET PPTTPPETPP NTPPESPPNT PPEIPPNTPP GTPPNTPPET PPTTPPETPP TTPPETSPNT PPETSPTTPP 201: EIPPNTPPQS PPNTPPETPP NTPPGTPPNT PPETLPNTPP GTPPNTPPET PPTTPPETPP ITPPETPPNT PPQSPPNTPP ETPPNTPPGT PPNTPPETLP 301: NTPPGTPPNT PPETPPTTPP ETPPITPPET PPNTPPQSPP NTPPETPPNT PPGTPPNTPK TPPTTPPETP PNTPPETPPT TQPETPPNTP PQSPPNTPPE 401: TPPNTPPETL PNTPPGTPPN QSPQIPPTLP PNTPPETPPQ TPPNSPPETL PTLPPNTPPE ALPNTPPQSP PTLPPNTPPQ IPPTLPPNTP PQTPPNTPPE 501: TPPNTPPQTP PTVPPNTPPV TPPVRPPTTP PSPPPTTTLP PSSPTSPPNN SPSPPPPKSQ PPPPPPRFQP PPPPRGTCPR NANQIRTCSN VLRFFGNFLD 601: FRLAQPCCTL IRNLSDAEAA ACLCDLVRAR RSTLSPNIII LCRACGRRIP RGFTCP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)